Hi tronbaby,
Firstly, the coin door wiring remains untouched so no need to worry about that.
The wiring between the coin door and the machine is connected via an 8-way JST connector. The door connector is a plug, the machine connector is a socket.
Looking at the 8-way JST connector
socket (the connector on the machine side) viewed from the
front, the wiring is as follows:-
Top row from left to right:-
1. Credit Switch (wire to JAMMA pin 16 - Coin Switch #1, Parts side)
2. Meter Ground Link (wired to bottom right 4-way socket of Meter #1 and wired to bottom left of 6-way socket of Meter #2)
3. (Not used)
4. 12v (wire direct to power supply switcher)
Bottom Row:-
5. 12v Meter Link (wired to top left of 6-way socket of Meter #2)
6. Meter Ground (wired to top middle of 6-way socket of Meter #2)
7. Speaker + (wire to JAMMA pin 10, Parts side)
8. Speaker - (wire to JAMMA pin L, Solder side)
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For Meter #1 (5V) 4-way JST connector
socket (the connector on the machine side just behind the cash box) viewed from the
front, the wiring is as follows:-
Top left: 5v (wire direct to power supply switcher)
Top Right: Coin Meter (wire to JAMMA pin 8 - Coin Counter #1, Parts side)
Bottom left: Ground (wire direct to power supply switcher)
Bottom right: Meter Ground Link (wired to pin 2 of 8-way door connector and to bottom left pin of 6-way socket of Meter #2)
For Meter #2 (12V) 6-way JST connector
socket (the connector on the machine side just behind the cash box) viewed from the
front, the wiring is as follows:-
Top left: 12v Meter Link (wired to pin 5 of 8-way door connector)
Top middle: Meter Ground Link (wired to pin 6 of 8-way door connector)
Top Right: Ground (wire direct to power supply switcher)
Bottom left: Meter Ground Link (wired to pin 2 of 8-way door connector and to bottom right pin of 4-way socket of Meter #1)
Bottom Middle: (Not used)
Bottom Right: (Not used)
Below is a picture of my diagram I used when wired mine which might help to explain things:-