Hi, in addition to the two 12V clock signals to the CPU itself there are two TTL level clock signals and the CPU reset signal also originates on the I/O PCB.
The Black and White I/O PCB is basically the same circuit as the colour except for the colour overlay but all of the circuit locations are different.
There are also at least two versions of the B&W I/O, if yours is the 500803 type the pin connections should match the ones I traced out and marked in red here:
http://www.jbtech.linkpc.net/ninty.htm#090723
Apart from the main clock and reset signals it may be worth checking the outputs of all the 74(LS)161s to make sure they are all counting / dividing as all of the sync signals are derived via these.
Hope that helps, regards John.